Machine Learning in Computational Biology: Daily Digest
Carlos Oliver
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09.01.2026: Multi-Modal Molecular Design, Semi-Supervised Learning, and Activity Cliff Estimation
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Surface-based Molecular Design with Multi-modal Flow Matching…
08.01.2026: Knowledge Distillation, Deep Learning for Cancer Subtyping, and Protein Function Reasoning
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Inferring Clinically Relevant Molecular Subtypes of Pancreatic Cancer…
07.01.2026: Molecular Property Prediction, Learnable DNA Tokenization, and Multi-Scale Graph Autoregressive Modeling
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Multi-scale Graph Autoregressive Modeling: Molecular Property…
06.01.2026: Equivariant Models, Protein and RNA Structure Prediction, and Large Language Models for Molecular Applications
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Deep Learning Framework for RNA Inverse Folding with Geometric…
05.01.2026: Uncertainty Quantification, Protein Energy Alignment, and Quantum Simulation in Molecular Modeling
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Rule-Based Approaches to Atomic Sentence Extraction…
30.12.2025: Design Archetypes, Interpretable Machine Learning, and Benchmarking in Molecular and Protein Science
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 On the comparison of models and experiments in the study of DNA open…
29.12.2025: Molecule Generative Models, In Vitro Evaluation, and Hit Generation
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 From In Silico to In Vitro: Evaluating Molecule Generative Models for…
24.12.2025: Multi-Modal Molecular Elucidation, Agentic Optimization, and Advanced RNA Structure Analysis
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 NMIRacle: Multi-modal Generative Molecular Elucidation from IR and…
23.12.2025: Advances in Out-of-Distribution Detection, Substructure-Aware Protein Encoding, and Diffusion Models for Molecular Graphs
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Greater than the Sum of Its Parts: Building Substructure into Protein…
22.12.2025: Homology-Clustering, Modular On-Device Pipelines, and Generative Multi-Objective Optimization for Molecular and Protein Design
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Atom: Efficient On-Device Video-Language Pipelines Through Modular…
18.12.2025: Protein Language Models, Cross-Modal Molecular Mapping, and Machine Learning for RNA-Targeting Drug Design
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Multiscale Cross-Modal Mapping of Molecular, Pathologic, and…
16.12.2025: Molecular Property Prediction, Conditional Generation Strategies, and Multi-Omics Fusion with Graph Networks
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Modeling Dabrafenib Response Using Multi-Omics Modality Fusion and…
15.12.2025: Planner-Aligned Actions, 3D Molecular Sculpting, and Sparse Feature Masks for Chemical Language Models
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 MolSculpt: Sculpting 3D Molecular Geometries from Chemical Syntax…
12.12.2025: Optimal Transport, Autonomous Molecular Dynamics, and Atom-Level Diffusion for Protein Modeling
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 DynaMate: An Autonomous Agent for Protein-Ligand Molecular Dynamics…
11.12.2025: Protein Language Models, Molecular Transformers, and Knowledge Graphs for Improved Molecular Discovery
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Self Distillation Fine-Tuning of Protein Language Models Improves…
10.12.2025: Transformer-Based Protein Embeddings, Secondary Structure Prediction, and Deep Learning Advances
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Protein Secondary Structure Prediction Using Transformers…
09.12.2025: Advances in Hierarchical Molecular Representations, Diffusion Models, and Self-Supervised Learning for Structural Prediction
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Chemistry Integrated Language Model using Hierarchical Molecular…
08.12.2025: Efficient Molecular Generation, Equivariant Models, and Improved Protein Function Prediction
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Mitigating the Antigenic Data Bottleneck: Semi-supervised Learning…
05.12.2025: Gene Elimination, Multi-Task Molecular Learning, and Graph-Based Cancer Detection
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 RGE-GCN: Recursive Gene Elimination with Graph Convolutional Networks…
04.12.2025: Atomic Diffusion Models, Atom-Level Tokenization, and Structure–Property Associations in Molecular Analysis
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University. ---------------------------------------- 0:00 Atomic Diffusion Models for Small Molecule Structure Elucidation from…
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Machine Learning in Computational Biology: Daily Digest has published 48 episodes since October 2025, covering topics in Life Sciences, Science.
Machine Learning in Computational Biology: Daily Digest is currently dormant with new episodes daily. Average episode length is 17m.
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